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Publications

Book Chapters | Papers | Abstracts | Patents

Book Chapters

  1. Potter, S. M. (2007). What can Artificial Intelligence get from Neuroscience? In M. Lungarella, J. Bongard, & R. Pfeifer (Eds.), Artificial Intelligence Festschrift: The next 50 years. (pp. 174-185). Berlin: Springer-Verlag.Color pre-print (5 MB PDF)
  2. Potter, S. M., Wagenaar, D. A. and DeMarse, T. B. (2006). Closing the Loop: Stimulation Feedback Systems for Embodied MEA Cultures. Advances in Network Electrophysiology Using Multi-Electrode Arrays, pp. 215-242. Taketani, M. and Baudry, M. New York, Springer. Full Text (1 MB PDF).
  3. Bakkum, D. J., Shkolnik, A. C., Ben-Ary, G., Gamblen, P., DeMarse, T. B. and Potter, S. M. (2004). Removing some 'A' from AI: Embodied Cultured Networks. Embodied Artificial Intelligence. Iida, F., Pfeifer, R., Steels, L. and Kuniyoshi, Y. New York, Springer. 3139: 130-145. Full Text (567 Kb PDF).
  4. Potter SM (2005) Two-photon microscopy for 4D imaging of living neurons. In: Imaging in Neuroscience and Development: A Laboratory Manual (Yuste R, Konnerth A, eds), pp 59-70: Cold Spring Harbor Laboratory Press. Full Text (372 Kb PDF). Table of contents (622 Kb PDF) for the book.

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Papers

  1. Bakkum, D. J., Chao, C. H., & Potter, S. M. (2008). Long-term activity-dependent plasticity of action potential propagation delay and amplitude in cortical networks. PLoS One, 3(5), e2088. Online Open-Access paper.
  2. Chao, Z. C., Bakkum, D. J., & Potter, S. M. (2008). Shaping Embodied Neural Networks for Adaptive Goal-directed Behavior. PLoS Computational Biology, 4(3): e1000042. Online Open-Access paper, supplement, and movie.
  3. Bakkum, D. J., Gamblen, P. M., Ben-Ary, G., Chao, Z. C., & Potter, S. M. (2007). MEART: The Semi-living Artist. Frontiers in NeuroRobotics, 1, #5,1-10. Online Open-Access paper.
  4. Madhavan, R., Chao, Z. C., & Potter, S. M. (2007). Plasticity of recurring spatiotemporal activity patterns in cortical networks. Physical Biology, 4:181-193.Reprint with supplemental materials (3.3MB PDF)
  5. Rolston, J. D., Wagenaar, D. A., & Potter, S. M. (2007). Precisely timed spatiotemporal patterns of neural activity in dissociated cortical cultures. Neuroscience, 148, 294-303.Reprint (1.1MB PDF)
  6. Chao, Z. C., Bakkum, D. J., & Potter, S. M. (2007). Region-specific network plasticity in simulated and living cortical networks: Comparison of the center of activity trajectory (CAT) with other statistics. Journal of Neural Engineering, 4, 294-308.Reprint (3.3MB PDF)
  7. Wagenaar, D. A., Pine, J., & Potter, S. M. (2006). Searching for plasticity in dissociated cortical cultures on multi-electrode arrays. Journal of Negative Results in BioMedicine 5:16. Reprint (656 kB PDF)
  8. Wagenaar, D. A., Nadasdy, Z., & Potter, S. M. (2006). Persistent dynamic attractors in activity patterns of cultured neuronal networks. Physical Review E 73:51907.1-8. Reprint (1.35 MB PDF)
  9. Wagenaar, D. A., Pine, J. and Potter, S. M. (2006). An extremely rich repertoire of bursting patterns during the development of cortical cultures. BMC Neuroscience 7:11.Reprint (2.79 MB PDF).
  10. Chao, Z. C., Bakkum, D. J., Wagenaar, D. A. and Potter, S. M. (2005) Effects of Random External Background Stimulation on Network Synaptic Stability After Tetanization: A Modeling Study . Neuroinformatics 3(3): 263-280. Reprint (1.52 MB PDF).
  11. Wagenaar, D. A. Madhavan, R. Pine, J. and Potter, S. M. (2005) Controlling bursting in cortical cultures with closed-loop multi-electrode stimulation. J. Neuroscience 25: 680-688. Reprint (501 Kb PDF).
  12. Wagenaar, D. A. and Potter, S. M. (2004). A versatile all-channel stimulator for electrode arrays, with real-time control. Journal of Neural Engineering 1: 39-45. Reprint (335 Kb PDF).
  13. Wagenaar, D. A., Pine, J. and Potter, S. M. (2004). Effective parameters for stimulation of dissociated cultures using multi-electrode arrays. Journal of Neuroscience Methods 138: 27-37. Full Text (2.4 MB PDF)
  14. Potter, S. M., Demarse, T. B., Blau, A. W. Wagenaar, D. A. (2003). "Multi-photon time-lapse microscopy and optical recording to study neural processing and plasticity." Microscopy and Microanalysis 9(2): 184-185.
  15. Potter, S. M. W., D. A. Madhavan, R. DeMarse, T. B. (2003). Long-term bidirectional neuron interfaces for robotic control, and in vitro learning studies. Engineering in Medicine and Biology, 25th Annual International Conference of the IEEE, Cancun. Full Text (180 Kb PDF).
  16. Wagenaar, D. A. and S. M. Potter (2002). "Real-time multi-channel stimulus artifact suppression by local curve fitting." J. Neurosci. Methods 120: 113-120. Full Text (308 Kb PDF) (Abstract).
  17. Potter, S. M., C. Zheng, D. S. Koos, P. Feinstein, S. E. Fraser and P. Mombaerts (2001). "Structure and emergence of specific olfactory glomeruli in the mouse." Journal of Neuroscience 21: 9713-9723. Reprint (2.1 MB PDF) Supplementary Material (animations, reconstructions).
  18. DeMarse, T. B., Wagenaar, D. A., Blau, A. W. and Potter, S. M. (2001). "The Neurally Controlled Animat: Biological Brains Acting with Simulated Bodies." Autonomous Robots 11: 305-310. Reprint (600 Kb PDF).
  19. Potter, S.M., DeMarse, T. B. (2001) "A new approach to neural cell culture for long-term studies." J. Neurosci. Methods 110: 17-24. Reprint (500 Kb PDF).
  20. Potter, S. M. (2001) "Distributed processing in cultured neuronal networks." Progress In Brain Research 130: 49-62. Preprint (400 Kb PDF).
  21. Potter SM, Lukina N, Longmuir KJ, Wu Y. (2001) "Multi-site two-photon imaging of neurons on multi-electrode arrays." SPIE Proceedings 4262: 104-110. Full Text (4.2 MB PDF).
  22. DeMarse, T. B., Wagenaar, D. A., Blau, A. W., and Potter, S. M., (2000) "Interfacing neuronal cultures to a computer generated virtual world." Proc. 7th Joint Symposium on Neural Computation, USC, p.36-42.
  23. Potter, S. M., Mart, A. N. and Pine, J. (1997) High-speed CCD movie camera with random pixel selection, for neurobiology research. SPIE Proceedings 2869: 243-253. Full Text (703 Kb PDF) or HTML or Doc.
  24. Potter, S. M., Fraser, S. E. and Pine, J. (1997) "Animat in a Petri Dish: Cultured Neural Networks for Studying Neural Computation." Proc. 4th Joint Symposium on Neural Computation, UCSD : 167-174. Available from the Institute for Neural Computation. See also the abstract for my RO1 grant.
  25. Pine, J., Maher, M. P., Potter, S. M., Tai, Y.-C., Tatic-Lucic, S., Wright, J. and Buzsaki, G. (1996) "A cultured neuron probe." 18th Ann. Int. Conf. IEEE Eng. Med. Biol. Soc.: #421.
  26. Potter, S. M. (1996) "Vital imaging: Two photons are better than one." Curr. Biol. 6: 1595-1598. (Invited)
    Download Full Text (400 Kb PDF) 3D Stereo Time-lapse movie.
  27. Potter, S. M., Pine, J. and Fraser, S. E. (1996) 'Neural transplant staining with DiI and vital imaging by 2-photon laser-scanning microscopy." Scanning Microscopy Supplement 10: 189-199. (Invited) Full HTML version.
  28. Potter, S. M., Wang, C. M., Garrity, P. A. and Fraser, S. E. (1996) "Intravital imaging of green fluorescent protein using 2-photon laser-scanning microscopy." Gene 173: 25-31. Abstract
  29. Potter, S. M., Henzel, W. J. and Aswad, D. W. (1993) In-vitro aging of calmodulin generates isoaspartate at multiple asn-gly and asp-gly sites in calcium-binding domain-ii, domain-iii, and domain-iv. Protein Science 2: 1648-1663. Abstract
  30. Potter, S. M., Johnson, B. A., Henschen, A., Aswad, D. W. and Guzzetta, A. W. (1992) The type-II isoform of bovine brain protein L-isoaspartyl methyltransferase has an endoplasmic-reticulum retention signal (...RDEL) at its C-terminus. Biochem. 31: 6339-6347. Abstract

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Abstracts

  1. Z. Nadasdy, D. A. Wagenaar, and S. M. Potter: Attractor dynamics of superbursts in living neural networks. SFN 2003, New Orleans, LA, 2003. Abstract text.
  2. D. A. Wagenaar, and S. M. Potter: Parameters for voltage- and current-controlled stimulation of cortical cultures through multi-electrode arrays. SFN 2003, New Orleans, LA, 2003. Abstract text.
  3. R. Madhavan, D. A. Wagenaar, and S. M. Potter: Multi-site stimulation quiets bursts and enhances plasticity in cultured networks. SFN 2003, New Orleans, LA, 2003. Abstract text.
  4. D. A. Wagenaar, R. Madhavan, and S. M. Potter: Stimulating news for MEA enthusiasts. SIMEA 2003, Denton, TX, 2003. Abstract Text.
  5. R. Madhavan, D. A. Wagenaar, C.-H. Chow, and S. M. Potter: Control of bursting in dissociated cortical cultures on multi-electrode arrays. SIMEA 2003, Denton, TX, 2003. Abstract text.
  6. T. B. DeMarse, D. A. Wagenaar, S. M. Potter: The neurally-controlled artificial animal: a neural-computer interface between cultured neural networks and a robotic body. SFN 2002, Orlando, FL.
  7. D. A. Wagenaar, T. B. DeMarse, and S. M. Potter: Response properties of cultured cortical networks as a substrate for the study of learning in vitro. Int. Conf. Cognitive and Neural Systems, Boston University, Boston, 2002. Abstract Text.
  8. D. A. Wagenaar, T. B. DeMarse, J. Pine, S. M. Potter: Development of complex activity patterns in cortical networks cultured on multi-electrode arrays. Soc. for Neuroscience 31st annual meeting, San Diego, 2001. Abstract Text.
  9. D. A. Wagenaar, T. B. DeMarse, and S. M. Potter: A toolset for realtime analysis of network dynamics in dense cultures of cortical neurons . 7th JSNC, University of California at San Diego, La Jolla, 2001. Abstract Text.
  10. DeMarse, T. B., Wagenaar, D. A, Blau, A. W. and Potter, S. M., "Neurally-controlled computer-simulated animals: A new tool for studying learning and memory in vitro," Society for Neuroscience, 26:467.20. Abstract text.
  11. DeMarse, T., Wagenaar, D., Blau, A., and Potter, S., "The Animat Project: Biological brains acting with simulated bodies," NASA Workshop on Biomorphic Robotics, Pasadena, Aug. 14-16, 2000.
  12. DeMarse, T., Wagenaar, D., Blau, A., and Potter, S., "The Animat Project: Interfacing neuronal cultures to a computer-generated virtual world," 2nd International Meeting on Substrate-Integrated Microelectrode Arrays, Reutlingen, Germany, June 21-23, 2000.
  13. Blau, A., DeMarse, T., Pine, J., and Potter, S., "High-speed imaging of neuronal network activity," 2nd International Meeting on Substrate-Integrated Microelectrode Arrays, Reutlingen, Germany, June 21-23, 2000.
  14. Kilborn, K. and Potter, S. M. (1998) Delineating and tracking hippocampal dendritic spine plasticity using neural network analysis of two-photon microscopy. Soc. Neurosci. Abstr. 24: 422.5. Abstract text.
  15. Potter, S. M., Kantor, D. B., Mamelak, A. N., Fraser, S. E. and Schuman, E. M. (1997) 3D time-lapse imaging of hippocampal dendritic spine plasticity using 2-photon microscopy. Soc. Neurosci. Abstr. 23: 136.5. Abstract text.
  16. Fraser, S. E., Pine, J. and Potter, S. M. (1997) 2-Photon time-lapse imaging of transplant integration in cultured rat hippocampal slices. Soc. Neurosci. Abstr. 23: 140.18.
  17. Pine, J. and Potter, S. M. (1997) A high-speed CCD camera for optical recording of neural activity. Soc. Neurosci. Abstr. 23: 259.6.
  18. Potter, S. M. (1997). 3D Time-lapse imaging of hippocampal slices. Applications of Multiple-Photon Excitation Imaging, Cleveland, Ohio [Satellite symposium for Microscopy and Microanalysis '97]
  19. Pine, J., Maher, M. and Potter, S. M. (1997). Microstructures for studies of cultured neural networks. 3rd Intl. Conf. on Cellular Engineering, Nice, France.
  20. Potter, S. M, Garrity, P., and Fraser, S. E. (1996) Using two-photon microscopy to image GFP in living specimens. British Soc. for Dev. Biol/British Soc. for Cell Biol--Joint Spring Mtg., York, England.
  21. Potter, S. M., Fraser, S. E., and Pine, J. (1996) The greatly reduced photodamage of 2-photon microscopy enables extended 3-dimensional time-lapse imaging of living neurons. Scanning 18: 147.
  22. Potter, S. M. and Fraser, S. E. (1995) Two-photon imaging of cultured rat hippocampal neurons stained with DiI, DiO, DiA, and Bodipy ceramide. Soc. Neurosci. Abstr. 21: 427.3.
  23. Aswad, D. W., Johnson, B. A., Potter, S. M., Hancock, W. S., and Henzel, W. J. (1991). Occurrence and detection of isoaspartate in peptides and proteins. 2nd Intl. Congress on Amino Acids and Analogues 1:177.
  24. Aswad D. W., Johnson, B. A., Potter, S. M., and Hancock, W. S. (1990). Enzymatic analysis of isoaspartate formation in proteins. 3rd Intl. Symposium on Analytical Methods in Biotechnology

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Patents

(links to US Patent and Trademark Office)

  1. Potter, S. M. (2003). "High-speed CCD array camera with random pixel selection." US Patent 6,633,331.
  2. Potter, S. M. (2003). "Sealed Culture Chamber." US Patent 6,521,451 (09/733,644).

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